Best islands to visit in Japan

Among the most beautiful countries in the world, Japan is hugely diverse , especially when it comes to its thousands of islands. There are approximately 6800 to choose from, so you don't have to go far to find mountains, beaches, coral reefs and quaint little villages. Many of the islands are almost untouched by tourism, so they offer a purely traditional experience. Here is our pick of the best Japanese Islands.

The information in this article is inspired by The Rough Guide to Japan, your essential guide for visiting Japan.

1. Sakurajima

Kagoshima’s most dramatic landmark is impossible to miss — Sakurajima, a brooding volcanic cone just 4km from the city, constantly puffing black ash into the sky. 

It’s one of the best places to visit in Japan if you want nature with a bit of fire and fury.

The island also happens to be a top spot for a soak in an onsen. Unlike most hot springs in Japan, here you can literally see the heat source — Sakurajima’s simmering crater is proof enough. Expect strong mineral waters, coastal views, and the occasional rumble in the background.

How to get there

Good news — getting around Japan is often easy, thanks to its efficient public transport network. 

In the case of Sakurajima, ferries to the island depart from Kagoshima, and take just 15 minutes or so.

2. Okinawa-Hontō

Once the centre of the Ryukyu kingdom, Okinawa-Hontō, or Okinawa Main Island, is Japan's best-kept secret. 

Locals are fiercely proud of their Ryuku heritage, and yet the competing cultures of Japan and America are also prevalent.

To some extent, the island still feels like occupied territory, especially central Okinawa-Hontō, where the American bases and the nearby “American” towns, with their drive-ins and shopping malls. They've become something of a tourist attraction for mainland Japanese, who come to soak up a bit of American culture.

How to get there

Take a flight to Naha — direct domestic flights are available from major Japanese cities, including Tokyo (2.5–3 hours) and Osaka (2 hours). 

In addition, Naha is also served by international flights from cities like Taipei, Seoul and Hong Kong.

3. Kerama Islands

A knot of three large, inhabited Japanese islands and numerous pinpricks of sand and coral, the Keramas offer some of the most beautiful and unspoilt beaches in Okinawa, and superb diving among the offshore reefs. 

The island of Zamami is a sleepy place home to mere hundreds of people, yet has recently become hugely popular with international tourists. 

As a result, if the Keramas are on your travel itinerary, you'll need to book your accommodation in Japan early.

How to get there

From Naha, the main island of Okinawa, head to Tomari Port to take either a high-speed ferry (30–50 minutes), or cheaper regular ferry (1–2 hours).

4. Yakushima - one of the best Japanese islands for hiking

Though a great place to go hiking in Japan, the UNESCO World Heritage-listed island of Yakushima is worth visiting whether you are a hiker or not. 

Its beaches are lovely, as are its onsen, which are ideal after a tough hike.

From craggy mountain peaks to wave after wave of dripping, subtropical rainforest, towering cedar trees which predate the Roman Empire and the all-pervasive scent of moss and flowers this island is among the exceptional Japanese islands. 

The beautiful Yakushima greedily gobbles up almost every passing cloud, resulting in an average annual rainfall of at least four metres on the coast and a staggering 8-10m in its mountainous interior.

How to get there

You can fly to Yakushima from Fukuoka (1 hour) or Kagoshima (35 minutes).

Alternatively take a high-speed ferry (2-3 hours) or car ferry (around four hours) from Kagoshima.

5. The Miyako Islands

Centred around Miyako-jima, this small cluster boasts some of the best beaches in all of Japan, but these are graced by precious few international visitors. 

Long overshadowed by Zamami-Jima and the Yaeyama group, its appeal took another knock with the closure of ferry services to Naha and Ishigaki, making Miyako an expensive add-on to an Okinawan tour.

However, it remains a time-out favourite with mainland Japanese, some of whom stay for weeks or months on end, chalking off beach after beach and dive after dive.

How to get there

Take a flight to Miyako Airport or Shimojishima Airport from Tokyo (3 hours), Osaka (2.5 hours), or Naha (50 minutes).

6. Ishigaki-jima

With star-sand beaches to pad along, and waterfalls tumbling down emerald mountains, it’s no wonder that even Okinawans go misty-eyed when talking about the Yaeyama Islands. 

Japan finally fizzles out at this far-flung spray of semi-tropical islets, 430km south of Okinawa-Hontō and almost 3000km from northern Hokkaido, and those lucky enough to make it this far are in for quite a finale.

Yaeyama's life revolves around Ishigaki-jima, the islands’ main transport hub and population centre. The rest of the island is a predominantly rural and mountainous landscape, fringed with rocky peninsulas, stunning beaches and easily accessible reefs.

How to get there

Take a flight Tokyo (3 hours), Osaka (2.5 hours), or Naha (1 hour). 

Also note that ferries connect Ishigaki to nearby islands like Taketomi, Iriomote and Kohama.

7. Ikuchi-jima

Sun-kissed Ikuchi-jima, covered with citrus groves, attracts plenty of tourists each summer to its palm-fringed beaches, in particular the sweeping man-made Sunset Beach on the west coast. 

The island can comfortably be toured by bicycle in a day, as can the islet Kone-Shima, which is linked by a bridge to Ikuchi-jima’s main settlement, the quaint Setoda on the island’s northwest coast. 

How to get there

Take the JR Sanyo Shinkansen (bullet train) to from Hiroshima, Osaka or Okayama.

New to this mode of transport? Read our beginners guide to Japan’s bullet trains (shinkansen), and find out everything you need to know about choosing the right Japan Rail Pass

8. Enoshima

Tied to the mainland by a 600m-long bridge, the tiny, sacred island of Enoshima offers a peaceful escape from the city buzz. While its shrines, botanical garden, and a pair of underwhelming caves make up the core landmarks, the real appeal lies in simply wandering. 

With no motor traffic and plenty of scenic spots, it's one of the more relaxed things to do in Enoshima — perfect for a slow-paced afternoon by the sea.

How to get there

From Tokyo, take the JR Tokaido Line or JR Shonan-Shinjuku Line to Fujisawa Station (50–60 minutes), then transfer to the Enoden Line (Enoshima Electric Railway) to Enoshima Station (10 minutes).

From there, it’s a short walk across the causeway to the island.

9. Ōmishima

The big draw of Omi-Shima is one of the oldest shrines in the country, Oyamazumi-jimga, dating back to the end of the Kamakura era (1192-1333). 

The interior of the island is hilly, but there is a decent 5km, mainly downhill, cycle track from Inokuchi, the ferry port closest to Ikuchi-jima, across the island from Miyaura.

How to get there

Take the JR Sanyo Shinkansen to Onomichi station. From Onomichi, rent a bike or take a local bus across the Shimanami Kaido expressway and bridges to Ōmishima.

Alternatively, if you have your own vehicle, drive the Nishiseto Expressway (Shimanami Kaido) from Onomichi or Imabari. Ōmishima IC is the main exit.

10. Sadogashima

For centuries, the rugged, S-shaped island of Sadogashima was a place of exile for criminals and political undesirables; though even today it has a unique atmosphere born of its isolation and a distinct cultural heritage that encompasses haunting folk songs, nō theatre and puppetry, as well as the more recently established Kodo drummers.

It’s a deceptively large island, consisting of two parallel mountain chains linked by a fertile central plain that shelters most of Sado’s historical relics.

How to get there

Take the Joetsu Shinkansen from Tokyo to Niigata Station (2 hours). Next, take a ferry (2.5 hours) or jetfoil (one hour).

11. Islands near Dōgashima

Just 5km up the road from Matsuzaki, is west Izu’s prime tourist trap, with hotels, souvenir shops and cafeterias catering to a steady stream of punters. With such a developed infrastructure, its a good place to consider if you're visiting Japan with kids.

 The focus of all this activity is a collection of picturesque limestone outcrops lying serenely offshore.

You can admire these Japanese islands from various viewpoints around the bay or, better still, from one of the tour boats run by Dōgashima Marine which set off from a jetty in front of the main car park to putter around the bay or along the coast.

How to get there

Take the JR Tokaido Shinkansen from Tokyo to Mishima (1 hour), then transfer to the Izu-Hakone Railway to take a train to Shuzenji (30 minutes).

Finally, take a Tokai Bus bound for Dōgashima (1.5 hours).

12. Rishiri-tō

Most people come to Rishiri-tō to hike up the central 1721m volcano Rishiri-zan. The island is sometimes called Rishiri-Fuji because its shape is said to resemble the famous southern volcano; in reality, it’s spikier and a lot less symmetrical.

Even if the weather is unpromising, it’s still worth making the ascent (which takes ten to twelve hours) to break through the clouds on the upper slopes and be rewarded with panoramic views from the summit, which is crowned with a small shrine.

How to get there

Fly from Sapporo to Wakkanai (1 hour). Then take a ferry to Rishiri Island (1 hour 40 minutes).

Note that during peak season (June–September), occasional direct flights run from Sapporo to Rishiri (50 minutes).

13. Izu-Ōshima

Some 110km south of Tokyo, Izu-Ōshima, or simply Ōshima, is the nearest and largest, at 52km in circumference, of the Izu-Shotō, a chain of seven volcanic Japanese islands stretching over 300km of ocean. 

While the others are now dormant, Ōshima’s Mihara-yama (764km) has the dubious distinction of being the world’s most active volcano after Italy’s Stromboli and Kilauea in Hawaii.

Ōshima’s other main raw is its forests of camellia, particularly in early spring when the blossoms of an estimated three million trees colour the lower slopes a dusky red. 

Try if possible to come midweek – spring and autumn are best – and stay at least one night, to experience the slow pace of island life.

How to get there

From Tokyo’s Takeshiba Pier), take a budget-friendly overnight car ferry (6–8 hours), or a high-speed jet ferry (around 1 hour 45 minutes).

14. Naoshima

Idyllic Naoshima, 13km north of Takamatsu, is home to three stunning Ando Tadao-designed galleries as well as several large-scale installations and outdoor sculptures from major international and Japanese talent.

In the island’s main town and ferry port, Miyanoura, is an amazing bathhouse, while around the southern Gotanji area, there are sheltered beaches with glorious Inland Sea views – all making Naoshima a blissful escape.

How to get there

Take the JR Shinkansen to Okayama, then take a local train (JR Uno Line) to Uno (45 minutes). Then transfer to Uno Port and catch a ferry (20 minutes).

15. Rebun-tō

Shaped like a crab’s claw adrift in the Sea of Japan, Rebun-tō is most famous for its wildflowers – from May to September the island’s rolling green slopes are said to bloom with three hundred different types of alpine plants.

At the island’s southern end is its main port, the small and attractive settlement of Kafuka, which spreads uphill from the coast. 

In the north is the small fishing village of Funadomari, which makes a good base for hikers out to the northern cape, Sukoton Misaki.

How to get there

From Sapporo, fly to Wakkanai (1 hour), then take a two-hour ferry to Rebun.

16. Iriomote-jima

Brooding darkly some 20km west of Ishigaki, Iriomote-Jima is an extraordinarily wild place for Japan. 

Rising sharply out of the ocean, some ninety per cent of its uncharted, mountainous interior is covered with dense subtropical rainforest, much of it protected as the Iriomote National Park. Rumour has it that Iriomote often plays host to disaffected Japanese, living rough in the jungle.

A more substantiated inhabitant, though equally elusive, is one of the world’s rarest species, the yamaneko or Iriomote lynx, a nocturnal, cat-like animal. 

The island and its surrounding waters are also home to a splendid array of flora and coral reefs shimmering with tropical fish.

How to get there

First, fly to New Ishigaki from Tokyo, Osaka or Naha, then take a 40-50-minute ferry from Ishigaki.

17. Ago-wan

This large, sheltered bay of Japanese islands has myriad coves and deep inlets. For centuries, divers have been collecting natural pearls from its warm, shallow waters, but things took off when Mikimoto started producing his cultured pearls in Ago-wan islands in the twentieth century.

Nowadays, hundreds of rafts moored between the islands trace strangely attractive patterns on the water, while in the nets beneath thousands of oysters busily work their magic.

How to get there

From Nagoya, take the Kintetsu Limited Express to Kashikojima (around two hours) — gateway town to exploring Ago-wan.

Alternatively, from Nagoya, it’s about a 2.5-hour drive via the Ise Expressway.

18. Taketomi-jima

Just before six o’clock each evening, the tiny Japanese island of Taketomi-jima undergoes a profound, magical transformation. This is the time of the last ferry back to Ishigaki-Jima – after that, you’re marooned, but there are few better places to be stuck.

Just over 1km wide and home to fewer than three hundred people, the island’s population swells during the day with folk eager to see its traditional houses, ride on buffalo-drawn carts and search lovely sandy beaches for the famous minuscule star-shaped shells.

When the day-trippers are safely back in Ishigaki, those who have chosen to stay on will have Taketomi almost to themselves – it’s possible to walk its dirt paths at night for hours on end without seeing a single soul.

How to get there

First, fly to New Ishigaki from Tokyo, Osaka or Naha, then take ferry to Taketomi-jima. They run every 30–60 minutes, and take a mere 10–15 minutes.

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